A sixteen year old girl is not growing anymore. She has reached her full height.
In general, people will shy away from telling a teenager to lose weight, especially if she is within normal weight limits, since there are so many girls that develop eating disorders. Therefore, this board is not a good place to ask the question.
I would recommend that you go to a nutritionist and ask the question there. Many health plans cover nutitionist visits. A personal trainer probably would be a second choice, but be careful to go to one who deals with HS athletes. A running coach may not necessarily be a good choice, especially if their only focus is running, rather than overall health.
Finally, be aware that many adults who are within normal weight range do choose and want to lose a few pounds, for whatever reason, so your request is not abnormal or unusual. On this board, however, you will not find anyone telling you, yes, go ahead and lose them.
The first part of the last sentence in your OP is especially worrisome.